[project]
# 项目名称
name = "causal-inference-agent"
# 项目版本（遵循语义化版本控制）
version = "0.1.0"
# 项目描述
description = "Causal Inference Agent System"
# 项目作者
authors = [
    { name = "Causal Inference Team", email = "team@example.com" }
]
# 项目许可证（可选）
license = "MIT"
# 项目 readme 文件
readme = "README.md"
# 项目关键词
keywords = ["causal-inference", "agent", "data-science", "statistics"]
# 项目分类
classifiers = [
    "Development Status :: 3 - Alpha",
    "Intended Audience :: Developers",
    "Intended Audience :: Science/Research",
    "Operating System :: OS Independent",
    "Programming Language :: Python :: 3",
    "Programming Language :: Python :: 3.11",
    "Programming Language :: Python :: 3.12",
    "Topic :: Scientific/Engineering :: Artificial Intelligence",
    "Topic :: Scientific/Engineering :: Mathematics",
]

# Python 版本要求
# 最低支持 Python 3.11
requires-python = ">=3.11"

# 项目运行时依赖
dependencies = [
    "pandas>=2.0.0",        # 数据处理和分析
    "openpyxl>=3.1.0",      # Excel 文件读写支持
    "numpy>=1.24.0",        # 数值计算基础库
    "scipy>=1.10.0",        # 科学计算和统计功能
    "pydantic>=2.0.0",      # 数据验证和设置管理（用于 JSON 输出）
    "requests>=2.31.0",     # HTTP 请求库（用于 LLM API 调用）
    "networkx>=3.0",        # 图论与因果图构建
    "scikit-learn>=1.3.0",  # 机器学习与因果效应估计
]

# 可选依赖（额外功能）
[project.optional-dependencies]
# 开发依赖
dev = [
    "pytest>=7.4.0",        # 测试框架
    "pytest-cov>=4.1.0",    # 代码覆盖率
    "black>=23.0.0",        # 代码格式化
    "ruff>=0.1.0",          # 代码 linting
    "mypy>=1.5.0",          # 类型检查
    "pre-commit>=3.4.0",    # Git 预提交钩子
]

# 文档依赖
docs = [
    "sphinx>=7.0.0",        # 文档生成工具
    "sphinx-rtd-theme>=1.3.0",  # Sphinx 主题
    "myst-parser>=2.0.0",   # Markdown 解析器
]

# 测试依赖
test = [
    "pytest>=7.4.0",
    "pytest-cov>=4.1.0",
    "pytest-xdist>=3.3.0",   # 并行测试
]

# 完整依赖（包含所有可选依赖）
all = [
    "causal-inference-agent[dev,docs,test]",
]

# 包配置
[tool.setuptools.packages.find]
include = ["causal_agent*", "input_processor*", "data*"]

[project.scripts]
# 命令行入口点
causal-agent = "causal_agent.cli:main"

[project.urls]
# 项目相关链接
Homepage = "https://github.com/example/causal-inference-agent"
Repository = "https://github.com/example/causal-inference-agent"
"Bug Tracker" = "https://github.com/example/causal-inference-agent/issues"
"Documentation" = "https://causal-inference-agent.readthedocs.io"
"Changelog" = "https://github.com/example/causal-inference-agent/blob/main/CHANGELOG.md"

# ==================== uv 配置 ====================

# uv 索引配置
[tool.uv]
# 使用 PyPI 作为默认索引
index-url = "https://pypi.org/simple"
# 额外索引（可选）
extra-index-url = []
# 依赖解析策略
resolution = "lowest-direct"

# ==================== 开发工具配置 ====================

# Black 代码格式化配置
[tool.black]
line-length = 88
target-version = ['py39', 'py310', 'py311', 'py312']
include = '\.pyi?$'
exclude = '''
/(
    \.git
    | \.hg
    | \.mypy_cache
    | \.tox
    | \.venv
    | _build
    | buck-out
    | build
    | dist
)/
'''

# Ruff 代码 linting 配置
[tool.ruff]
line-length = 88
target-version = "py39"
# 启用的 lint 规则
select = [
    "E",   # pycodestyle errors
    "W",   # pycodestyle warnings
    "F",   # Pyflakes
    "I",   # isort
    "B",   # flake8-bugbear
    "C4",  # flake8-comprehensions
    "UP",  # pyupgrade
]
ignore = [
    "E501",  # line too long (handled by black)
    "B008",  # do not perform function calls in argument defaults
]

[tool.ruff.per-file-ignores]
"__init__.py" = ["F401"]  # unused imports in __init__.py

# MyPy 类型检查配置
[tool.mypy]
python_version = "3.11"
warn_return_any = true
warn_unused_configs = true
disallow_untyped_defs = true
ignore_missing_imports = true

# Pytest 测试配置
[tool.pytest.ini_options]
testpaths = ["tests", "input_processor"]
python_files = ["test_*.py"]
python_functions = ["test_*"]
addopts = [
    "-v",
    "--strict-markers",
    "--strict-config",
]
markers = [
    "slow: marks tests as slow",
    "integration: marks tests as integration tests",
]

# 代码覆盖率配置
[tool.coverage.run]
source = ["."]
omit = [
    "*/tests/*",
    "*/__init__.py",
    "*/conftest.py",
]

[tool.coverage.report]
exclude_lines = [
    "pragma: no cover",
    "def __repr__",
    "raise AssertionError",
    "raise NotImplementedError",
    "if __name__ == .__main__.:",
]

# 预提交钩子配置
[tool.pre-commit]
# 默认钩子
default_stages = ["commit", "push", "manual"]